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Publications

Below is a list of peer-reviewed publications which relate to CellML. If you think there are CellML-related articles missing from the list below, please feel free to contact us with the publication details and we will add the article for you.

  • Nickerson, D.P. and Buist, M.L. Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model. Progress in Biophysics and Molecular Biology. 2008;98:38-51.

  • Garny, A., Nickerson, D., Cooper, J., Weber dos Santos, R., Miller, A.K., McKeever, S., Nielsen, P. and Hunter, P.J. CellML and associated tools and techniques. Philosophical Transactions of the Royal Society A. 2008 September;366(1878):3017-3043.

  • Nickerson, D.P., Corrias, A. and Buist, M.L. Reference descriptions of cellular electrophysiology models. Bioinformatics. 2008 April;24(8):1112-1114.
  • Terkildsen, J.R., Niederer, S.A., Crampin, E.J., Hunter, P.J. and Smith, N.P. Using Physiome standards to couple cellular functions for cardiac excitation contraction. Experimental Physiology. 2008 March.

  • Cooling, M., Hunter, P. and Crampin, E.J. Modeling biological modularity with CellML. IET Systems Biology. 2008 March;2(2):73-79.

  • Nickerson, D., Nash, M., Nielsen, P., Smith, N. and Hunter, P. Computational multiscale modeling in the IUPS Physiome Project: modeling cardiac electromechanics. IBM Journal of Research and Development. 2006 November;50(6):617-630.

  • Schilstra, M.J., Li. L., Matthews, J., Finney, A., Hucka, M. and Le Novère, N. CellML2SBML: conversion of CellML into SBML. Bioinformatics. 2006 April 15;22(8):1018-1020.
  • Hunter, P.J. Modeling human physiology: the IUPS/EMBS Physiome Project. Proceedings of the IEEE. 2006 April;94(4):678-691.
  • Nickerson, D.P. and Hunter, P.J. The Noble cardiac ventricular electrophysiology models in CellML. Progress in Biophysics and Molecular Biology. 2006 Jan-April;90(1-3):346-359.
  • Hunter, P.J. and Nielsen, P.M.F. A strategy for integrative computational physiology. Physiology. 2005 Oct;20(5):316-325.
  • Nickerson, D. and Hunter, P. Using CellML in Computational Models of Multiscale Physiology. Conference Proceedings: 27th Annual International Conference of the IEEE Engineering in Medicine and Biology. 2005 Sept; 6096-6099.
  • Le Novère, N., Finney, A., Hucka, M., Bhalla, U.S., Campagne, F., Collado-Vides, J., Crampin, E.J., Halstead, M., Klipp, E., Mendes, P., Nielsen, P., Sauro, H., Shapiro, B., Snoep, J.L., Spence, H.D. and Wanner, B.L. Minimum information requested in the annotation of biochemical models (MIRIAM). Nature Biotechnology. 2005 Dec;23(12):1509-1515.
  • Crampin, E.J., Halstead, M.D.B., Hunter, P.J., Nielsen, P.M.F., Noble, D., Smith, N.P. and Tawhai, M. Computational physiology and the Physiome Project. Experimental Physiology: Translation and Integration. 2004 Jan;89(1):1-26.
  • Lloyd, C.M., Halstead, M.D.B. and Nielsen, P.F. CellML: its future, present and past. Progress in Biophysics and Molecular Biology. 2004 Jun-Jul;85(2-3):433-450.
  • Nielsen, P.F. and Halstead, M.D. The Evolution of CellML. Conference Proceedings: 26th Annual International Conference of the IEEE Engineering in Medicine and Biology. 2004;7:5411-5414.
  • Cuellar, A.A., Lloyd, C.M., Nielsen, P.F., Bullivant, D.P., Nickerson, D.P. and Hunter, P.J. An overview of CellML 1.1, a biological model description language. SIMULATION: Transactions of The Society for Modeling and Simulation International. 2003 Dec;79(12):740-747.
  • Cuellar, A.A., Nielsen, P.F., Bullivant, D.P. and Hunter, P.J. CellML 1.1 for the Definition and Exchange of Biological Models. Conf. Proc. 2003 IFAC Symposium on Modelling and Control in Biomedical Systems. 2003 Nov; 451-456.
  • Bullivant, D.P., Hedley, W.J., Hunter, P.J., Nelson, M.R. and Nielsen, P.F. Languages for the Definition and Exchange of Biological Models. Proc. of the Physiological Society of New Zealand. Volume 20, August 2001.
  • Hedley W.J., Nelson, M.R., Nielsen, P.F., Bullivant, D.P. and Hunter, P.J. XML Languages for Describing Biological Models. Proceedings of the Physiological Society of New Zealand. Vol 19. December 2000.