Personal tools
 

Databases

Ontologies

http://www.geneontology.org/ontology/process.ontology

GO (gene ontology)
http://www.ebi.ac.uk/microarray/General/Events/SOFG/agenda.html

SOFG Standards & Ontologies for Genomics
http://www.geneontology.org/doc/gobo.html

GOBO Global Open Biology Ontologies

Bioinformatics

http://schiele.mit.edu:8080/index.html

Experibase
http://www.sbw-sbml.org

Systems Biology Workbench2
http://www.e-cell.org

E-Cell project
http://www.ncbi.nih.gov/

NIH National Centre for Biotechnology Information
http://www.nrcam.uchc.edu

Virtual Cell project
http://www.biomolecular.org

The Biomolecular Networks Initiative (BNI)

http://www.gepasi.org/

Gepasi: computer simulation of biochemistry
http://cabig.nci.nih.gov/

Cancer Biomed Information Grid
http://obo.sourceforge.net/list.shtml

Open Biology Ontologies

Proteins (Structure and Function)

http://pedro.man.ac.uk/home.shtml

S/w & Schema for proteomics exp data
http://mged.sourceforge.net/ontologies/OntologyResources.php

MGED ontology working group

http://www.hupo.org/

Human Proteome Organisation
http://www.ncbi.nih.gov/

NIH National Centre for Biotechnology Information
http://www.proceryon.com/solutions/products.html

protein annotation tools
http://www-biology.ucsd.edu/~msaier/transport/toc.html

Transport protein classification
http://www.chem.qmul.ac.uk/iubmb/enzyme/

Enzyme classification
http://www.chem.qmul.ac.uk/iubmb/misc/phorm.html

Peptide hormine classification
http://kr.expasy.org/cgi-bin/prosite-list.pl

Database of protein families and domains
http://kr.expasy.org/cgi-bin/enzyme-search-cl

Enzyme database by SWISSPROT
http://www.mcponline.org/

MCPonline Molecular & Cellular Proteomics online
http://www.chem.qmw.ac.uk/iubmb/

Int.al Union of Biochemistry & Molecular Biology
http://scop.mrc-lmb.cam.ac.uk/scop/

Structural Classification of Proteins
http://doqcs.ncbs.res.in

Bhalla database

Cell Signalling

http://doqcs.ncbs.res.in/~bhalla/doqcs/template.php?x=home&y=index

Database of quantitative cell signalling
http://www.cellsignal.com/retail/

Cell signalling

http://www.signaling-gateway.org/molecule/

AFCS/Nature Molecule pages

http://stke.sciencemag.org/

STKE Signal Transduction Knowledge Environment
http://www.biocarta.com/genes/index.asp

Biocarta signalling pathways

Physiome

http://www.uni-mainz.de/FB/Medizin/Anatomie/workshop/vishuman/EReady.html

Visible Human crosssections
http://www.physiome.org

Physiome Project (Jim Bassingthwaighte)
http://www.med.harvard.edu/AANLIB/home.html

Whole Brain Atlas
http://www.apsarchive.org/renalpelvis/index.htm

The renal pelvis